PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 238aa    MW: 27425.5 Da    PI: 10.2868
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.41e-09931374897
          DUF573  48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +++++q+ +K+++LK+K++k  +      +  ++++hdqki+e++++iWg
  XP_016475702.1  93 NFTEKQIAKKLKKLKEKYHKLARS-----KSLIKTPHDQKIYEIARQIWG 137
                     6899***************99988.....6789****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.8E-1064137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MCDFQTVHTY KSQLCPKFQL SPNTSSKTMT TPPRPKRNPT SAANHRKNSP KSPEKTISKT  60
PETHRVFTEN DEIQLLKTLS GSPNTSEFTS NGNFTEKQIA KKLKKLKEKY HKLARSKSLI  120
KTPHDQKIYE IARQIWGRNV AKGKEKEPVV ELHRSCEEEV NLEEFPFLVS EMMSVFGRSG  180
YCKEGLRRLG KEKLKKMNEK WMELRLKEAE IMVNKAKLYH EQLKSVVEGS KGTDNEAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475702.11e-177PREDICTED: uncharacterized protein LOC107797339
TrEMBLA0A0V0HMG29e-86A0A0V0HMG2_SOLCH; Putative ovule protein
TrEMBLK4D9Q31e-85K4D9Q3_SOLLC; Uncharacterized protein
STRINGSolyc11g066460.1.14e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1363478